STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP72589.1COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (325 aa)    
Predicted Functional Partners:
EDP72594.1
COG0346 Lactoylglutathione lyase and related lyases.
   
  0.960
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
 0.887
EDP72770.1
Pyruvate flavodoxin dehydrogenase.
  
 
 0.876
EDP70293.1
COG0572 Uridine kinase.
   
  0.767
EDP72590.1
DNA-binding response regulator, CitB family (Rec-wHTH domains); COG2771 DNA-binding HTH domain-containing proteins.
       0.765
EDP71386.1
COG0527 Aspartokinases.
  
 
 0.721
trpF
COG0135 Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
  
 0.713
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
  
 0.713
EDP70789.1
Probable oxidoreductase; COG0277 FAD/FMN-containing dehydrogenases.
  
 
 0.706
EDP70721.1
Putative phosphoserine phosphatase; COG3830 ACT domain-containing protein.
  
 0.682
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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