STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP72618.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (223 aa)    
Predicted Functional Partners:
EDP72619.1
Sulfate transporter.
 
     0.881
EDP71553.1
Hypothetical protein.
  
     0.677
EDP72616.1
Hypothetical protein; COG0288 Carbonic anhydrase.
 
     0.658
EDP72617.1
Sulphate transporter; COG0659 Sulfate permease and related transporters (MFS superfamily).
 
     0.656
EDP71482.1
Chitin synthase; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
     0.570
EDP72620.1
Hypothetical protein; COG0659 Sulfate permease and related transporters (MFS superfamily).
       0.548
EDP72621.1
Aerotolerance-related exported protein.
       0.489
EDP72622.1
Aerotolerance-related exported protein; COG0457 FOG: TPR repeat.
       0.489
EDP72623.1
Aerotolerance-related exported protein.
       0.410
EDP72624.1
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.410
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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