Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDP72746.1CHU large protein; uncharacterized. (1136 aa)    
Predicted Functional Partners:
EDP70955.1
COG3735 Uncharacterized protein conserved in bacteria.
  
     0.747
EDP72851.1
COG2932 Predicted transcriptional regulator; Belongs to the peptidase S24 family.
  
     0.665
EDP71923.1
Hypothetical protein.
  
     0.664
EDP69538.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.654
EDP71925.1
Hypothetical protein; COG3291 FOG: PKD repeat.
  
     0.643
EDP69490.1
Transcriptional regulator.
  
     0.642
EDP69607.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.639
EDP71662.1
COG3968 Uncharacterized protein related to glutamine synthetase.
  
     0.631
EDP71504.1
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.616
EDP71655.1
COG2356 Endonuclease I.
  
     0.607
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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