STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP72773.1Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (616 aa)    
Predicted Functional Partners:
EDP72774.1
Putative adenylate/guanylate cyclase; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
   
 0.861
EDP72503.1
RNA polymerase, sigma-54 factor; COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog.
 
  
 0.845
EDP72770.1
Pyruvate flavodoxin dehydrogenase.
    
 0.821
EDP71559.1
COG0642 Signal transduction histidine kinase.
  
 0.814
EDP71485.1
Two-component hybrid sensor and regulator.
   
 0.744
EDP70426.1
Sensor histidine kinase.
   
 0.736
EDP71248.1
COG0642 Signal transduction histidine kinase.
   
 0.733
EDP71352.1
Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.
  
 0.724
EDP70198.1
Two-component system sensor histidine kinase/response; COG0642 Signal transduction histidine kinase.
  
 0.724
EDP71926.1
Two-component system sensor histidine kinase/response regulator, hybrid ('one-component system').
 
 0.724
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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