STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP72784.1Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators. (194 aa)    
Predicted Functional Partners:
EDP71371.1
COG0067 Glutamate synthase domain 1.
    
 
 0.849
EDP72785.1
Riboflavin synthase subunit alpha.
       0.773
EDP72783.1
Hypothetical protein; COG2971 Predicted N-acetylglucosamine kinase.
       0.768
EDP70118.1
Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 
 0.675
EDP72782.1
ASPIC/UnbV domain protein; COG3386 Gluconolactonase.
       0.629
EDP72787.1
COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase.
  
  
 0.617
EDP72781.1
Hypothetical protein.
       0.604
EDP72786.1
Hypothetical protein; COG3525 N-acetyl-beta-hexosaminidase.
       0.584
guaA-2
GMP synthetase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.534
ribB
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.534
Your Current Organism:
Flavobacteriales bacterium ALC1
NCBI taxonomy Id: 391603
Other names: F. bacterium ALC-1, Flavobacteriales bacterium ALC-1
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