node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDY87105.1 | EDY87291.1 | GP5015_2282 | GP5015_2470 | [T] COG3103 SH3 domain protein. | Oligopeptidase A; [E] COG0339 Zn-dependent oligopeptidases. | 0.620 |
EDY87105.1 | ubiD | GP5015_2282 | GP5015_2259 | [T] COG3103 SH3 domain protein. | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | 0.737 |
EDY87105.1 | xth_2 | GP5015_2282 | GP5015_2379 | [T] COG3103 SH3 domain protein. | [L] COG0708 Exonuclease III. | 0.773 |
EDY87291.1 | EDY87105.1 | GP5015_2470 | GP5015_2282 | Oligopeptidase A; [E] COG0339 Zn-dependent oligopeptidases. | [T] COG3103 SH3 domain protein. | 0.620 |
EDY87291.1 | gyrB | GP5015_2470 | GP5015_2338 | Oligopeptidase A; [E] COG0339 Zn-dependent oligopeptidases. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.451 |
EDY87291.1 | recF | GP5015_2470 | GP5015_2238 | Oligopeptidase A; [E] COG0339 Zn-dependent oligopeptidases. | DNA replication, recombinaison and repair protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.426 |
EDY87291.1 | ubiD | GP5015_2470 | GP5015_2259 | Oligopeptidase A; [E] COG0339 Zn-dependent oligopeptidases. | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | 0.640 |
EDY87291.1 | xth_2 | GP5015_2470 | GP5015_2379 | Oligopeptidase A; [E] COG0339 Zn-dependent oligopeptidases. | [L] COG0708 Exonuclease III. | 0.628 |
gyrB | EDY87291.1 | GP5015_2338 | GP5015_2470 | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Oligopeptidase A; [E] COG0339 Zn-dependent oligopeptidases. | 0.451 |
gyrB | recF | GP5015_2338 | GP5015_2238 | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DNA replication, recombinaison and repair protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.790 |
gyrB | xth_2 | GP5015_2338 | GP5015_2379 | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | [L] COG0708 Exonuclease III. | 0.410 |
recF | EDY87291.1 | GP5015_2238 | GP5015_2470 | DNA replication, recombinaison and repair protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | Oligopeptidase A; [E] COG0339 Zn-dependent oligopeptidases. | 0.426 |
recF | gyrB | GP5015_2238 | GP5015_2338 | DNA replication, recombinaison and repair protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.790 |
ubiD | EDY87105.1 | GP5015_2259 | GP5015_2282 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | [T] COG3103 SH3 domain protein. | 0.737 |
ubiD | EDY87291.1 | GP5015_2259 | GP5015_2470 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | Oligopeptidase A; [E] COG0339 Zn-dependent oligopeptidases. | 0.640 |
ubiD | xth_2 | GP5015_2259 | GP5015_2379 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | [L] COG0708 Exonuclease III. | 0.742 |
xth_2 | EDY87105.1 | GP5015_2379 | GP5015_2282 | [L] COG0708 Exonuclease III. | [T] COG3103 SH3 domain protein. | 0.773 |
xth_2 | EDY87291.1 | GP5015_2379 | GP5015_2470 | [L] COG0708 Exonuclease III. | Oligopeptidase A; [E] COG0339 Zn-dependent oligopeptidases. | 0.628 |
xth_2 | gyrB | GP5015_2379 | GP5015_2338 | [L] COG0708 Exonuclease III. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.410 |
xth_2 | ubiD | GP5015_2379 | GP5015_2259 | [L] COG0708 Exonuclease III. | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. | 0.742 |