STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
futA1Iron uptake protein FutA; Alternative name(s): ABC transporter periplasmic iron-binding protein. (338 aa)    
Predicted Functional Partners:
sfuB
Putative Fe[3+]-transport system protein SfuB.
 
 
 0.982
AGI72864.1
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.943
AGI71796.1
Hypothetical protein.
     
 0.902
futA2
Iron uptake protein FutA; Alternative name(s): ABC transporter periplasmic iron-binding protein.
  
  
 
0.900
AGI72536.1
Imelysin peptidase.
  
    0.688
thiP
Thiamine ABC transporter permease protein ThiP.
  
  
 0.576
AGI70359.1
FAD dependent oxidoreductase.
  
    0.539
trxB
Thioredoxin reductase TrxB.
   
  
 0.520
AGI70373.1
Putative MFS-type transporter.
  
  
 0.473
AGI74294.1
MFS-type transporter.
  
  
 0.473
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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