STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI70790.1IclR family transcriptional regulator. (292 aa)    
Predicted Functional Partners:
AGI70787.1
Hypothetical protein.
 
    0.824
sgaA
Serine--glyoxylate aminotransferase SgaA.
 
    0.716
AGI70786.1
Putative ornithine cyclodeaminase/mu-crystallin family.
 
     0.692
AGI70788.1
Putative serine racemase.
 
    0.647
AGI71493.1
Putative IclR family transcriptional regulator.
  
     0.586
AGI74189.1
Putative allophanate hydrolase subunit1.
  
    0.531
AGI74438.1
IclR family transcriptional regulator; MhpR-like.
  
     0.469
AGI70870.1
Hypothetical protein; Allophanate hydrolase subunit 2-like, conserved.
  
    0.456
AGI74188.1
Allophanate hydrolase subunit2.
  
    0.456
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.