STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI70928.1Amino acid ABC transporter ATP-binding protein. (256 aa)    
Predicted Functional Partners:
AGI70927.1
Putative ABC-transporter periplasmatic amino-acid binding protein.
 
 0.993
AGI70926.1
Amino acid ABC transporter periplasmatic substrate-binding protein.
 
 
 0.940
AGI70924.1
Amico acid ABC transporter permease protein.
 
 
 0.926
AGI70925.1
Amino acid ABC transporter permease protein.
 
  
 0.893
AGI71808.1
Putative inner membrane amino-acid ABC transporter permease protein.
 
 0.878
AGI71809.1
Putative inner membrane amino-acid ABC transporter permease protein.
 
 0.877
AGI71828.1
Amino acid ABC transporter permease protein.
 
 0.874
AGI71829.1
Amino acid ABC transporter permease protein.
 
 0.873
bztC
Glutamate/glutamine/aspartate/asparagine transport system permease protein BztC.
 
 
 0.872
ehuC
Ectoine/hydroxyectoine ABC-transporter permease protein.
 
 0.871
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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