STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI71283.1Putative NlpC/P60 family phage cell wall peptidase; Associated with putative gene transfer agent. (145 aa)    
Predicted Functional Partners:
AGI71280.1
Putative gene transfer agent protein.
 
  
 0.967
AGI71281.1
Putative gene transfer agent protein.
 
     0.965
AGI71282.1
Putative gene transfer agent protein.
 
     0.965
AGI71278.1
Putative gene transfer agent protein.
 
    0.961
AGI71277.1
Putative gene transfer agent major tail protein.
 
     0.960
AGI71274.1
Putative gene transfer agent protein.
 
     0.936
AGI71276.1
Putative gene transfer agent protein.
 
     0.934
AGI71275.1
Putative gene transfer agent head-tail adaptor.
 
    0.931
AGI71279.1
Putative gene transfer agent protein.
 
     0.930
AGI71271.1
Putative gene transfer agent portal protein.
 
    0.849
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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