STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctP2TRAP transporter DctP subunit. (326 aa)    
Predicted Functional Partners:
AGI71937.1
Putative TRAP transporter DctQ component.
 
  
 0.906
dctM2
TRAP transporter DctM subunit.
 
  
 0.896
dctM5
TRAP transporter DctM subunit.
 
  
 0.805
AGI74602.1
TRAP-transporter large permease protein.
 
  
 0.804
AGI71657.1
TRAP transporter DctM component.
 
  
 0.799
dctQ4
TRAP transporter DctQ subunit.
 
  
 0.794
AGI71460.1
TRAP dicarboxylate transporter large permease[DctM] component.
 
  
 0.783
dctM4
TRAP transporter DctM subunit.
 
  
 0.783
dctM1
TRAP transporter DctM subunit.
 
  
 0.767
AGI71935.1
LacI family transcriptional regulator.
       0.484
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.