STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI72000.1Hypothetical protein. (287 aa)    
Predicted Functional Partners:
metA
Homoserine O-succinyltransferase MetA; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
 
     0.832
AGI72001.1
Hypothetical protein.
       0.701
AGI71998.1
Hypothetical protein.
  
   0.626
AGI71996.1
TetR family transcriptional regulator.
     
 0.621
AGI71151.1
Hypothetical protein.
  
     0.582
AGI72271.1
Acyl carrier protein.
  
 
 0.581
AGI72659.1
Hypothetical protein DUF927.
  
     0.564
AGI71997.1
Putative polyphosphate kinase2.
       0.553
AGI72832.1
ABC transporter ATP-binding protein.
    
 0.525
AGI73225.1
Hypothetical protein DUF1150.
  
     0.486
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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