Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGI72035.1Putative AraC family transcriptional regulator. (333 aa)    
Predicted Functional Partners:
AGI72034.1
Hypothetical protein.
       0.615
AGI72033.1
Hypothetical protein.
       0.610
soxD1
Sarcosine oxidase2 subunit delta.
 
    0.593
AGI72036.1
Phospho-2-dehydro-3-deoxyheptonate aldolase.
       0.527
AGI72237.1
Hypothetical protein.
  
     0.522
soxA1
Sarcosine oxidase2 subunit alpha; Belongs to the GcvT family.
 
     0.487
AGI70879.1
Putative DNA-binding protein.
  
    0.454
AGI73398.1
Putative DNA-binding protein.
  
    0.440
AGI72106.1
Sarcosine oxidase-like protein.
 
    0.435
soxB2
Sarcosine oxidase3 subunit beta.
  
     0.402
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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