Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AGI72053.1Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (465 aa)    
Predicted Functional Partners:
puuB
Gamma-glutamylputrescine oxidoreductase.
 
  
 0.938
speB2
Agmatinase SpeB; Belongs to the arginase family.
  
 
  0.920
AGI72589.1
Putative lysine/ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
 0.905
AGI71703.1
Ureohydrolase superfamily protein; Belongs to the arginase family.
   
 
  0.903
AGI71894.1
Ureohydrolase superfamily protein; Belongs to the arginase family.
   
 
  0.903
AGI73136.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.903
AGI73397.1
Aldehyde dehydrogenase.
    
 0.903
AGI73470.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.903
AGI74369.1
Aldehyde dehydrogenase.
    
 0.903
AGI74612.1
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
    
 0.903
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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