STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bdhAD-beta-hydroxybutyrate dehydrogenase BdhA. (257 aa)    
Predicted Functional Partners:
atoA
Acetate CoA-transferase subunit beta.
 
 0.928
AGI73168.1
CoA transferase.
 
 
 0.924
AGI74367.1
Alternative name(s): SDR family protein.
  
  
 
0.921
mvaB
hydroxymethylglutaryl-CoA lyase MvaB.
   
 
 0.904
AGI72083.1
Patatin-like protein phospholipase-like protein.
 
 
 0.873
AGI70915.1
PHB depolymerase.
  
   
 0.619
petB
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.547
phbC
Poly-beta-hydroxybutyrate polymerase.
 
  
 0.507
fabF2
3-oxoacyl-[acyl-carrier-protein] synthase FabF; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.442
AGI71262.1
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.436
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.