STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxB2Sarcosine oxidase3 subunit beta. (414 aa)    
Predicted Functional Partners:
soxA1
Sarcosine oxidase2 subunit alpha; Belongs to the GcvT family.
 
 0.992
AGI70812.1
Sarcosine oxidase subunit alpha family protein; Belongs to the GcvT family.
 
 0.991
soxD1
Sarcosine oxidase2 subunit delta.
 
 0.985
AGI72106.1
Sarcosine oxidase-like protein.
 
 0.981
AGI73388.1
Creatinase.
 
 
  0.928
soxG
Sarcosine oxidase1 subunit gamma.
  
  0.923
soxA2
Sarcosine oxidase1 subunit alpha; Belongs to the GcvT family.
 
 
 0.922
AGI70813.1
Putative sarcosine oxidase subunit gamma.
  
  0.921
sgaA
Serine--glyoxylate aminotransferase SgaA.
  
 
 0.915
AGI71155.1
Putative aminotransferase.
  
 
 0.915
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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