STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI73279.1Putative DNA-damage-inducible protein. (443 aa)    
Predicted Functional Partners:
AGI73280.1
Thioesterase-like protein.
 
    0.875
AGI73281.1
Thioesterase-like protein.
  
    0.857
AGI73282.1
Putative MerR family transcriptional regulator.
     
 0.712
AGI72294.1
Hypothetical protein.
   
 
 0.553
AGI74656.1
CrtB-like phytoene synthase.
   
 
 0.553
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.514
gapA2
Glyceraldehyde-3-phosphate dehydrogenase1; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.463
gapB
Glyceraldehyde-3-phosphate dehydrogenase B; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.463
gapA1
Glyceraldehyde-3-phosphate dehydrogenase1; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.463
AGI72747.1
Putative cation transporter; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
 
    0.404
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.