STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI73408.1Putative HTH-type transcriptional regulator. (294 aa)    
Predicted Functional Partners:
AGI73410.1
Putative TRAP transporter DctQ component.
 
     0.928
AGI73409.1
Putative N-formylglutamate amidohydrolase.
 
  
 0.912
AGI73412.1
Putative TRAP transporter DctP subunit.
 
     0.864
AGI73411.1
Putative TRAP transporter DctM subunit.
 
     0.862
AGI73414.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.842
AGI73413.1
Putative glutamine ligase; Belongs to the glutamine synthetase family.
 
    0.823
AGI73415.1
Iron-containing alcohol dehydrogenase.
 
   
 0.822
iaaA
Isoaspartyl peptidase IaaA.
  
    0.546
AGI74181.1
Cobalt transport protein-like, conserved.
 
    0.537
AGI73416.1
Spermidine/putrescine ABC transporter extracellular solute-binding protein.
 
    0.451
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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