STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFO91062.1Cytochrome C biogenesis protein, transmembrane region. (250 aa)    
Predicted Functional Partners:
thiol
Disulfide interchange protein tlpA-like protein.
 
  
 0.756
ccmG
Thiol:disulfide interchange protein CcmG.
 
  
 0.739
AFO91063.1
Hypothetical protein.
     
 0.582
AFO91061.1
Putative sulfurtransferase; Belongs to the sulfur carrier protein TusA family.
       0.581
ccmC
Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
  
  
 0.512
AFO91064.1
Putative cytochrome P450.
       0.506
ccmF
Cytochrome c-type biogenesis protein CcmF.
     
 0.457
ccl
Cytochrome c-type biogenesis protein Ccl; Possible subunit of a heme lyase.
     
 0.455
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
     
 0.455
actP
Copper-transporting P-type ATPase ActP.
 
   
 0.434
Your Current Organism:
Phaeobacter inhibens
NCBI taxonomy Id: 391619
Other names: P. inhibens DSM 17395, Phaeobacter gallaeciensis DSM 17395, Phaeobacter inhibens DSM 17395
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.