Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFO91497.1 | csaA | PGA1_c17970 | PGA1_c17980 | Hypothetical protein. | Protein CsaA. | 0.798 |
AFO91497.1 | dmlA | PGA1_c17970 | PGA1_c17990 | Hypothetical protein. | D-malate dehydrogenase. | 0.766 |
budB | dmlA | PGA1_c12350 | PGA1_c17990 | Acetolactate synthase, catabolic; Belongs to the TPP enzyme family. | D-malate dehydrogenase. | 0.932 |
budB | ilvC | PGA1_c12350 | PGA1_c06580 | Acetolactate synthase, catabolic; Belongs to the TPP enzyme family. | Ketol-acid reductoisomerase IlvC; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.975 |
budB | ilvH | PGA1_c12350 | PGA1_c20220 | Acetolactate synthase, catabolic; Belongs to the TPP enzyme family. | Acetolactate synthase isozyme 3 small subunit. | 0.991 |
budB | ilvI1 | PGA1_c12350 | PGA1_c19360 | Acetolactate synthase, catabolic; Belongs to the TPP enzyme family. | Acetolactate synthase isozyme, large subunit; Belongs to the TPP enzyme family. | 0.922 |
budB | ilvI2 | PGA1_c12350 | PGA1_c20210 | Acetolactate synthase, catabolic; Belongs to the TPP enzyme family. | Acetolactate synthase isozyme 3 large subunit. | 0.927 |
budB | leuA | PGA1_c12350 | PGA1_c26470 | Acetolactate synthase, catabolic; Belongs to the TPP enzyme family. | 2-isopropylmalate synthase LeuA; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.870 |
budB | leuD | PGA1_c12350 | PGA1_c29790 | Acetolactate synthase, catabolic; Belongs to the TPP enzyme family. | 3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.420 |
csaA | AFO91497.1 | PGA1_c17980 | PGA1_c17970 | Protein CsaA. | Hypothetical protein. | 0.798 |
csaA | dmlA | PGA1_c17980 | PGA1_c17990 | Protein CsaA. | D-malate dehydrogenase. | 0.779 |
dmlA | AFO91497.1 | PGA1_c17990 | PGA1_c17970 | D-malate dehydrogenase. | Hypothetical protein. | 0.766 |
dmlA | budB | PGA1_c17990 | PGA1_c12350 | D-malate dehydrogenase. | Acetolactate synthase, catabolic; Belongs to the TPP enzyme family. | 0.932 |
dmlA | csaA | PGA1_c17990 | PGA1_c17980 | D-malate dehydrogenase. | Protein CsaA. | 0.779 |
dmlA | ilvC | PGA1_c17990 | PGA1_c06580 | D-malate dehydrogenase. | Ketol-acid reductoisomerase IlvC; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.826 |
dmlA | ilvH | PGA1_c17990 | PGA1_c20220 | D-malate dehydrogenase. | Acetolactate synthase isozyme 3 small subunit. | 0.981 |
dmlA | ilvI1 | PGA1_c17990 | PGA1_c19360 | D-malate dehydrogenase. | Acetolactate synthase isozyme, large subunit; Belongs to the TPP enzyme family. | 0.941 |
dmlA | ilvI2 | PGA1_c17990 | PGA1_c20210 | D-malate dehydrogenase. | Acetolactate synthase isozyme 3 large subunit. | 0.964 |
dmlA | leuA | PGA1_c17990 | PGA1_c26470 | D-malate dehydrogenase. | 2-isopropylmalate synthase LeuA; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.743 |
dmlA | leuC | PGA1_c17990 | PGA1_c29780 | D-malate dehydrogenase. | 3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.956 |
page 1 of 4