Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFO90835.1 | AFO93170.1 | PGA1_c11160 | PGA1_c35340 | Putative beta-hexosaminidase. | Putative phosphotransferase. | 0.954 |
AFO90835.1 | amiD | PGA1_c11160 | PGA1_c21950 | Putative beta-hexosaminidase. | Putative N-acetylmuramoyl-L-alanine amidase AmiD. | 0.570 |
AFO90835.1 | anmK | PGA1_c11160 | PGA1_c11350 | Putative beta-hexosaminidase. | anhydro-N-acetylmuramic acid kinase AnmK; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. | 0.832 |
AFO90933.1 | amiD | PGA1_c12160 | PGA1_c21950 | Hypothetical protein. | Putative N-acetylmuramoyl-L-alanine amidase AmiD. | 0.895 |
AFO91248.1 | amiD | PGA1_c15380 | PGA1_c21950 | Hypothetical protein; Belongs to the UPF0145 family. | Putative N-acetylmuramoyl-L-alanine amidase AmiD. | 0.843 |
AFO91882.1 | AFO91885.1 | PGA1_c21960 | PGA1_c21990 | Hypothetical protein. | Putative metal-dependent hydrolase; Belongs to the UPF0173 family. | 0.538 |
AFO91882.1 | amiD | PGA1_c21960 | PGA1_c21950 | Hypothetical protein. | Putative N-acetylmuramoyl-L-alanine amidase AmiD. | 0.838 |
AFO91882.1 | gatA | PGA1_c21960 | PGA1_c21970 | Hypothetical protein. | glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.785 |
AFO91882.1 | gatC | PGA1_c21960 | PGA1_c21980 | Hypothetical protein. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.785 |
AFO91885.1 | AFO91882.1 | PGA1_c21990 | PGA1_c21960 | Putative metal-dependent hydrolase; Belongs to the UPF0173 family. | Hypothetical protein. | 0.538 |
AFO91885.1 | amiD | PGA1_c21990 | PGA1_c21950 | Putative metal-dependent hydrolase; Belongs to the UPF0173 family. | Putative N-acetylmuramoyl-L-alanine amidase AmiD. | 0.525 |
AFO91885.1 | gatA | PGA1_c21990 | PGA1_c21970 | Putative metal-dependent hydrolase; Belongs to the UPF0173 family. | glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.612 |
AFO91885.1 | gatC | PGA1_c21990 | PGA1_c21980 | Putative metal-dependent hydrolase; Belongs to the UPF0173 family. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.635 |
AFO93170.1 | AFO90835.1 | PGA1_c35340 | PGA1_c11160 | Putative phosphotransferase. | Putative beta-hexosaminidase. | 0.954 |
AFO93170.1 | amiD | PGA1_c35340 | PGA1_c21950 | Putative phosphotransferase. | Putative N-acetylmuramoyl-L-alanine amidase AmiD. | 0.438 |
AFO93170.1 | anmK | PGA1_c35340 | PGA1_c11350 | Putative phosphotransferase. | anhydro-N-acetylmuramic acid kinase AnmK; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. | 0.422 |
amiD | AFO90835.1 | PGA1_c21950 | PGA1_c11160 | Putative N-acetylmuramoyl-L-alanine amidase AmiD. | Putative beta-hexosaminidase. | 0.570 |
amiD | AFO90933.1 | PGA1_c21950 | PGA1_c12160 | Putative N-acetylmuramoyl-L-alanine amidase AmiD. | Hypothetical protein. | 0.895 |
amiD | AFO91248.1 | PGA1_c21950 | PGA1_c15380 | Putative N-acetylmuramoyl-L-alanine amidase AmiD. | Hypothetical protein; Belongs to the UPF0145 family. | 0.843 |
amiD | AFO91882.1 | PGA1_c21950 | PGA1_c21960 | Putative N-acetylmuramoyl-L-alanine amidase AmiD. | Hypothetical protein. | 0.838 |
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