STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFO91959.1Hypothetical protein. (228 aa)    
Predicted Functional Partners:
alkK1
medium-chain-fatty-acid--CoA ligase AlkK.
     
 0.778
fadB2
Fatty acid oxidation complex subunit alpha; Includes enoyl-CoA hydratase / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase / 3-hydroxybutyryl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.768
fadA3
3-ketoacyl-CoA thiolase FadA; Belongs to the thiolase-like superfamily. Thiolase family.
       0.762
AFO91956.1
Putative transcriptional regulator, AraC family.
   
 
 0.560
AFO91961.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.466
AFO93111.1
Putative aminotransferase class 3.
     
 0.402
Your Current Organism:
Phaeobacter inhibens
NCBI taxonomy Id: 391619
Other names: P. inhibens DSM 17395, Phaeobacter gallaeciensis DSM 17395, Phaeobacter inhibens DSM 17395
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.