STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB2Putative type IV secretion system protein VirB2. (96 aa)    
Predicted Functional Partners:
virB
Type IV secretion system protein VirB.
 
 
 
 0.990
AFO91968.1
Putative type IV secretory pathway virB3 protein.
 
   
 0.967
virB9
Putative type IV secretion system protein VirB9.
 
   
 0.931
virB10
Putative type IV secretion system protein VirB10.
 
   
 0.930
virB8
Putative type IV secretion system protein VirB8.
 
   
 0.923
virB6
Putative type IV secretion system protein VirB6.
 
   
 0.919
AFO91965.1
Hypothetical protein.
 
     0.918
AFO91972.1
Hypothetical protein.
 
     0.901
AFO91966.1
Lytic transglycosylase-like protein.
 
   
 0.886
virB11
Putative type IV secretion system protein VirB11.
 
   
 0.885
Your Current Organism:
Phaeobacter inhibens
NCBI taxonomy Id: 391619
Other names: P. inhibens DSM 17395, Phaeobacter gallaeciensis DSM 17395, Phaeobacter inhibens DSM 17395
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.