STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFO92428.1Transcriptional regulatory protein, containing sigma-54 interaction domain. (453 aa)    
Predicted Functional Partners:
AFO91362.1
CheR and CheB-like domain-containing protein.
  
 
 0.875
AFO92427.1
Putative signal transduction histidine kinase.
 
 0.814
AFO92514.1
Hybrid histidine kinase/response regulator.
 
 
 0.712
AFO92430.1
Putative formate dehydrogenase gamma subunit.
 
     0.622
ntrB
Nitrogen regulation protein NtrB.
 
 0.596
AFO91652.1
Two-component system hybrid kinase.
 
 
 0.564
AFO90989.1
Hypothetical protein.
 
  
 0.559
AFO90897.1
Two-component regulatory system, sensory/regulatory protein.
 
 
 0.552
AFO92835.1
Signal transduction histidine kinase.
 
 
 0.549
AFO92861.1
Signal transduction histidine kinase.
 
 
 0.538
Your Current Organism:
Phaeobacter inhibens
NCBI taxonomy Id: 391619
Other names: P. inhibens DSM 17395, Phaeobacter gallaeciensis DSM 17395, Phaeobacter inhibens DSM 17395
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.