STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puuCGamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC; Belongs to the aldehyde dehydrogenase family. (494 aa)    
Predicted Functional Partners:
puuB
Gamma-glutamylputrescine oxidoreductase PuuB.
 
 
 0.928
fmt
methionyl-tRNA formyltransferase Fmt; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    
 0.901
AFO92871.1
Hypothetical protein.
 
     0.883
AFO92874.1
Hypothetical protein.
 
     0.865
AFO92873.1
Putative integral membrane protein.
 
     0.805
AFO92870.1
Putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase.
 
  
 0.768
AFO92875.1
Hypothetical protein.
 
    0.738
AFO92867.1
Fumarylacetoacetate hydrolase family protein.
 
 
 0.735
hpcG
2-oxo-hepta-3-ene-1,7-dioic acid hydratase HpcG.
 
  
 0.689
hpaD
3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD.
 
  
 0.681
Your Current Organism:
Phaeobacter inhibens
NCBI taxonomy Id: 391619
Other names: P. inhibens DSM 17395, Phaeobacter gallaeciensis DSM 17395, Phaeobacter inhibens DSM 17395
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