STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFO92978.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
leuS
leucyl-tRNA synthetase LeuS; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.812
AFO92980.1
Hypothetical protein.
 
     0.772
AFO92981.1
DNA polymerase 3-like protein.
 
     0.770
AFO92922.1
Hypothetical protein.
  
     0.757
AFO91595.1
Putative quinoprotein.
  
    0.692
AFO90846.1
Hypothetical protein.
  
     0.681
rpsU1
Protein RpsU; Related to ubiquinone biosynthesis protein COQ9.
  
     0.668
mrdA
Penicillin-binding protein 2.
  
     0.651
AFO91045.1
Hypothetical protein.
  
     0.643
AFO91669.1
Putative DNA polymerase III chi subunit, holC.
  
     0.548
Your Current Organism:
Phaeobacter inhibens
NCBI taxonomy Id: 391619
Other names: P. inhibens DSM 17395, Phaeobacter gallaeciensis DSM 17395, Phaeobacter inhibens DSM 17395
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.