STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ03143.1Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator. (79 aa)    
Predicted Functional Partners:
EDQ06491.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
     
 0.483
EDQ05343.1
COG4828 Predicted membrane protein.
  
     0.421
EDQ03141.1
Putative amino acid uptake ABC transporter periplasmic solute-binding protein precursor; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
       0.417
EDQ03142.1
SIS domain protein; COG1737 Transcriptional regulators.
       0.417
Your Current Organism:
Sulfitobacter indolifex
NCBI taxonomy Id: 391624
Other names: Oceanibulbus indolifex HEL-45, S. indolifex HEL-45, Sulfitobacter indolifex HEL-45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.