Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM78929.1Hypothetical protein. (454 aa)    
Predicted Functional Partners:
EDM75906.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
    
 0.734
EDM81565.1
Transposase, IS4; COG3385 FOG: Transposase and inactivated derivatives.
  
     0.546
EDM80199.1
Hypothetical protein; COG4257 Streptogramin lyase.
  
     0.509
EDM81743.1
Hypothetical protein; COG0206 Cell division GTPase.
  
     0.465
EDM77678.1
Hypothetical protein; COG0671 Membrane-associated phospholipid phosphatase.
  
     0.460
EDM80198.1
Hypothetical protein.
  
     0.457
EDM78993.1
Sensor histidine kinase; COG0515 Serine/threonine protein kinase.
    
 0.447
EDM78546.1
Probable serine/threonine kinase protein with two-component sensor domain; COG0515 Serine/threonine protein kinase.
    
 0.447
EDM81169.1
Sensor histidine kinase; COG0515 Serine/threonine protein kinase.
    
 0.447
EDM77716.1
Predicted ATPase; COG0515 Serine/threonine protein kinase.
    
 0.447
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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