STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM78929.1Hypothetical protein. (454 aa)    
Predicted Functional Partners:
EDM75906.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
    
  0.732
EDM81565.1
Transposase, IS4; COG3385 FOG: Transposase and inactivated derivatives.
  
     0.546
EDM79877.1
Two-component hybrid sensor and regulator; COG0642 Signal transduction histidine kinase.
    
  0.512
EDM80199.1
Hypothetical protein; COG4257 Streptogramin lyase.
  
     0.509
EDM79950.1
COG0642 Signal transduction histidine kinase.
    
  0.507
EDM81743.1
Hypothetical protein; COG0206 Cell division GTPase.
  
     0.465
EDM77678.1
Hypothetical protein; COG0671 Membrane-associated phospholipid phosphatase.
  
     0.460
EDM80198.1
Hypothetical protein.
  
     0.457
EDM76596.1
Transglutaminase-like superfamily domain protein; COG1305 Transglutaminase-like enzymes, putative cysteine proteases.
  
     0.446
EDM78324.1
Endoglucanase-related protein.
  
     0.439
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.