STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM81791.1Twin-arginine translocation pathway signal; COG0312 Predicted Zn-dependent proteases and their inactivated homologs. (553 aa)    
Predicted Functional Partners:
EDM81792.1
TldD protein; COG0312 Predicted Zn-dependent proteases and their inactivated homologs.
 
    0.953
EDM78315.1
Peptidase U62, modulator of DNA gyrase; COG0312 Predicted Zn-dependent proteases and their inactivated homologs.
 
 
 0.891
EDM81793.1
Hydrolase, haloacid dehalogenase-like family protein; COG0546 Predicted phosphatases.
       0.773
EDM81794.1
Hypothetical protein.
       0.773
EDM81795.1
Hypothetical protein.
       0.546
EDM81790.1
Hypothetical protein.
       0.524
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.