Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDM81941.1Hypothetical protein; COG0465 ATP-dependent Zn proteases. (554 aa)    
Predicted Functional Partners:
EDM81942.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.930
EDM79404.1
Hypothetical protein.
 
     0.774
EDM76333.1
Hypothetical protein.
 
     0.774
EDM79998.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
     0.774
EDM73606.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.774
EDM75860.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
     0.774
EDM78088.1
Hypothetical protein.
 
     0.774
EDM80579.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.774
EDM80679.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
     0.774
EDM80085.1
Hypothetical protein; COG0136 Aspartate-semialdehyde dehydrogenase.
 
     0.773
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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