STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM78338.1Hypothetical protein; COG0500 SAM-dependent methyltransferases. (227 aa)    
Predicted Functional Partners:
EDM80369.1
Non-ribosomal peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
 0.853
EDM78859.1
COG3321 Polyketide synthase modules and related proteins.
   
 0.761
EDM73611.1
COG3321 Polyketide synthase modules and related proteins.
   
 0.761
EDM73625.1
COG3321 Polyketide synthase modules and related proteins.
   
 0.761
EDM79073.1
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 0.760
EDM73737.1
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 0.672
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.581
EDM73516.1
COG3321 Polyketide synthase modules and related proteins.
   
 0.570
EDM81218.1
Nonribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.
   
 0.560
EDM73532.1
COG3321 Polyketide synthase modules and related proteins.
    
 0.552
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.