STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM74811.1COG3000 Sterol desaturase. (283 aa)    
Predicted Functional Partners:
EDM74812.1
Rieske (2Fe-2S) region; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
 
     0.892
EDM77678.1
Hypothetical protein; COG0671 Membrane-associated phospholipid phosphatase.
 
 0.740
EDM79026.1
COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
     0.680
EDM77831.1
Hypothetical protein.
  
 
   0.673
EDM76943.1
Hypothetical protein.
  
     0.671
EDM74842.1
Hypothetical protein.
 
     0.626
EDM81743.1
Hypothetical protein; COG0206 Cell division GTPase.
  
     0.619
EDM79325.1
Hypothetical protein; COG4188 Predicted dienelactone hydrolase.
  
     0.616
EDM74570.1
Hypothetical protein; COG0714 MoxR-like ATPases.
  
     0.608
EDM74932.1
Hypothetical protein.
  
 
  0.577
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.