STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM80002.1Hypothetical protein; COG2234 Predicted aminopeptidases. (498 aa)    
Predicted Functional Partners:
EDM79860.1
Peptidase, S9C (acylaminoacyl-peptidase) subfamily protein; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
 
    0.707
EDM78140.1
Peptidase, M28D (aminopeptidase ES-62) subfamily protein; COG2234 Predicted aminopeptidases.
  
     0.692
EDM79245.1
Hypothetical protein; COG4798 Predicted methyltransferase.
  
     0.659
EDM81754.1
Peptidase S9, prolyl oligopeptidase active site region; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
 
    0.644
EDM79016.1
COG4805 Uncharacterized protein conserved in bacteria.
  
     0.641
EDM76566.1
COG2272 Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family.
 
 0.641
EDM81207.1
COG4805 Uncharacterized protein conserved in bacteria.
  
     0.634
EDM81558.1
COG4805 Uncharacterized protein conserved in bacteria.
  
     0.626
EDM80202.1
Peptidase M1, membrane alanine aminopeptidase; COG0308 Aminopeptidase N.
  
 
 0.600
EDM75795.1
COG1164 Oligoendopeptidase F.
 
   
 0.594
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.