STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM76453.1Hypothetical protein; COG0457 FOG: TPR repeat. (407 aa)    
Predicted Functional Partners:
EDM75105.1
Tetratricopeptide repeat protein; COG0457 FOG: TPR repeat.
 
     0.782
EDM80786.1
Hypothetical protein.
  
    0.779
EDM77930.1
PDZ domain protein.
  
    0.778
EDM74364.1
FHA/TonB domain protein; COG1716 FOG: FHA domain.
  
    0.775
EDM78217.1
Tetratricopeptide repeat protein; COG0457 FOG: TPR repeat.
  
     0.774
EDM74799.1
Putative lipoprotein; COG3118 Thioredoxin domain-containing protein.
  
     0.774
EDM81064.1
Hypothetical protein.
  
     0.774
EDM74360.1
Tetratricopeptide repeat protein; COG0457 FOG: TPR repeat.
  
     0.774
EDM80280.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.774
EDM80785.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.773
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.