STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM80890.1COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (243 aa)    
Predicted Functional Partners:
EDM75906.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
  
 0.983
EDM80889.1
COG0642 Signal transduction histidine kinase.
 
 0.968
EDM78546.1
Probable serine/threonine kinase protein with two-component sensor domain; COG0515 Serine/threonine protein kinase.
 
 0.956
EDM80135.1
COG0642 Signal transduction histidine kinase.
 
 0.953
EDM78993.1
Sensor histidine kinase; COG0515 Serine/threonine protein kinase.
  
 0.949
EDM81169.1
Sensor histidine kinase; COG0515 Serine/threonine protein kinase.
  
 0.949
EDM77716.1
Predicted ATPase; COG0515 Serine/threonine protein kinase.
  
 0.949
EDM79446.1
Two-component hybrid sensor and regulator; COG0784 FOG: CheY-like receiver.
 
 0.939
EDM78107.1
Developmental sensor histidine kinase SasS; COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
 
 0.922
EDM75888.1
Sensory box sensor histidine kinase; COG0642 Signal transduction histidine kinase.
 
 0.915
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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