STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM74619.1Halogenase; COG0644 Dehydrogenases (flavoproteins). (574 aa)    
Predicted Functional Partners:
EDM80369.1
Non-ribosomal peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
 0.837
EDM76850.1
Hydroxylase; COG0644 Dehydrogenases (flavoproteins).
  
     0.773
EDM79140.1
Putative halogenase; COG0644 Dehydrogenases (flavoproteins).
  
     0.772
EDM76846.1
Hypothetical protein.
 
   
 0.770
EDM79141.1
Putative halogenase; COG0644 Dehydrogenases (flavoproteins).
  
     0.769
EDM76843.1
Membrane protein; COG4258 Predicted exporter.
 
     0.767
EDM76834.1
COG0236 Acyl carrier protein.
 
    0.759
EDM76838.1
Hypothetical protein; COG4261 Predicted acyltransferase.
 
     0.759
EDM80827.1
COG0236 Acyl carrier protein.
 
    0.759
EDM76837.1
Putative enzyme; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
     0.750
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.