STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM78470.1COG4102 Uncharacterized protein conserved in bacteria. (436 aa)    
Predicted Functional Partners:
EDM78471.1
Probable vegetatible incompatibility protein HET-E-1; COG0140 Phosphoribosyl-ATP pyrophosphohydrolase.
 
     0.913
EDM77411.1
Hypothetical protein.
  
     0.774
EDM80579.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
     0.751
EDM80580.1
Hypothetical protein.
  
     0.742
EDM79404.1
Hypothetical protein.
  
     0.731
EDM75860.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
     0.730
EDM80679.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
     0.730
EDM80085.1
Hypothetical protein; COG0136 Aspartate-semialdehyde dehydrogenase.
  
     0.727
EDM80483.1
Hypothetical protein.
  
     0.726
EDM79998.1
Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
     0.725
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.