STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM81407.1COG4402 Uncharacterized protein conserved in bacteria. (678 aa)    
Predicted Functional Partners:
EDM79541.1
Hypothetical protein.
  
     0.596
EDM78505.1
Hypothetical protein; COG1048 Aconitase A.
  
     0.554
EDM79296.1
Hypothetical protein; COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
     0.486
EDM75030.1
SWIM zinc finger domain protein.
  
     0.471
EDM77164.1
Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.
  
     0.469
EDM74123.1
Hypothetical protein; COG3150 Predicted esterase.
  
     0.458
EDM75032.1
Hypothetical protein; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin.
  
     0.449
EDM77178.1
WD-40 repeat protein; COG0542 ATPases with chaperone activity, ATP-binding subunit.
  
     0.445
EDM80982.1
Hypothetical protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
  
     0.435
EDM75031.1
WD domain G-beta repeat/PBS lyase HEAT-like repeat protein; COG2319 FOG: WD40 repeat.
  
     0.430
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.