STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM81512.1Twitching motility protein; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT. (368 aa)    
Predicted Functional Partners:
EDM81511.1
Type II secretion system protein; COG1459 Type II secretory pathway, component PulF.
 
  
 0.909
EDM79231.1
Type 4 prepilin-like proteins leader peptide processing enzyme; COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
   
 0.791
EDM81069.1
General secretion pathway protein F; COG1459 Type II secretory pathway, component PulF.
 
  
 0.788
EDM74728.1
COG4972 Tfp pilus assembly protein, ATPase PilM.
 
   
 0.768
EDM73831.1
Hypothetical protein.
 
   
 0.574
EDM79845.1
Hypothetical protein.
 
   
 0.567
EDM81510.1
COG0642 Signal transduction histidine kinase.
  
    0.492
EDM74732.1
Type IV pilus secretin PilQ; COG3064 Membrane protein involved in colicin uptake.
 
   
 0.475
EDM81513.1
COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin.
       0.425
Your Current Organism:
Plesiocystis pacifica
NCBI taxonomy Id: 391625
Other names: P. pacifica SIR-1, Plesiocystis pacifica SIR-1, Plesiocystis pacifica str. SIR-1, Plesiocystis pacifica strain SIR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.