STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI65916.1ABC transporter ATP-binding protein. (315 aa)    
Predicted Functional Partners:
AGI65917.1
ABC transporter permease protein.
  
 0.975
AGI69190.1
ABC-2 family inner membrane transport permease.
  
 0.882
AGI65918.1
Putative peptidase-domain-containing protein.
  
    0.659
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.555
AGI65919.1
Putative sodium/calcium exchanger; Alternative name(s): putative Na+/Ca+ antiport transporter.
  
 
 0.488
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
 
 0.467
AGI65920.1
Putative short chain dehydrogenase.
  
   0.457
AGI65915.1
Putative UPF0160 family protein.
       0.443
AGI67660.1
ABC transporter ATP-binding protein.
  
0.432
msbA1
Putative ABC transporter family lipid A export ATP-binding/permease protein MsbA.
  
0.432
Your Current Organism:
Octadecabacter antarcticus
NCBI taxonomy Id: 391626
Other names: O. antarcticus 307, Octadecabacter antarcticus 307, Octadecabacter antarcticus CIP 106731, Octadecabacter antarcticus str. 307, Octadecabacter antarcticus strain 307, unidentified alpha proteobacterium (clone 307), unidentified alpha proteobacterium clone 307
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