STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI67237.1Putative marR family transcriptional regulatory protein. (171 aa)    
Predicted Functional Partners:
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
   
    0.930
AGI69303.1
SMF family protein.
  
    0.794
AGI67236.1
Hypothetical protein DUF339.
 
     0.781
AGI67238.1
Putative integrase; Belongs to the 'phage' integrase family.
       0.773
AGI70029.1
Putative ComF/GntX family protein.
  
    0.720
AGI67235.1
Hypothetical protein; DNA binding.
       0.682
AGI70171.1
Hypothetical protein; Related to metal-dependent phosphohydrolase.
  
     0.653
AGI66165.1
Hypothetical protein.
  
     0.649
AGI66553.1
Hypothetical protein; Associated with ATP synthase.
 
   
 0.638
AGI70107.1
Hypothetical protein; Related to HemY.
  
     0.620
Your Current Organism:
Octadecabacter antarcticus
NCBI taxonomy Id: 391626
Other names: O. antarcticus 307, Octadecabacter antarcticus 307, Octadecabacter antarcticus CIP 106731, Octadecabacter antarcticus str. 307, Octadecabacter antarcticus strain 307, unidentified alpha proteobacterium (clone 307), unidentified alpha proteobacterium clone 307
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