STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI67582.1Putative 2-dehydro-3-deoxygalactonokinase; 'alternative name(s): 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase'. (303 aa)    
Predicted Functional Partners:
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA.
 
  
 0.971
AGI68621.1
DgoA-like KHG/KDPG aldolase family protein.
 
  
 0.969
AGI69415.1
Putative mandelate racemase / muconate lactonizing enzyme.
 
 
 0.934
AGI68622.1
2-dehydro-3-deoxygalactonokinase.
  
  
 
0.919
AGI66337.1
2-dehydro-3-deoxygalactonokinase.
  
  
 
0.917
AGI67581.1
Putative L-rhamnonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.883
gabD4
Succinate-semialdehyde dehydrogenase GabD; Belongs to the aldehyde dehydrogenase family.
       0.651
AGI67579.1
Putative GMC oxidoreductase.
       0.647
AGI67575.1
Sugar ABC transporter periplasmatic substrate-binding protein.
 
     0.604
AGI67574.1
GntR family transcriptional regulator.
 
  
 0.582
Your Current Organism:
Octadecabacter antarcticus
NCBI taxonomy Id: 391626
Other names: O. antarcticus 307, Octadecabacter antarcticus 307, Octadecabacter antarcticus CIP 106731, Octadecabacter antarcticus str. 307, Octadecabacter antarcticus strain 307, unidentified alpha proteobacterium (clone 307), unidentified alpha proteobacterium clone 307
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