STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chrRTranscriptional activator ChrR. (214 aa)    
Predicted Functional Partners:
sigK
RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.998
AGI69951.1
Hypothetical protein; Related to flavin containing amine oxidoreductase.
 
  
 0.973
AGI66918.1
Hypothetical protein.
  
 
 0.969
AGI69950.1
Hypothetical protein DUF1365.
 
  
 0.943
AGI69948.1
Putative short chain dehydrogenase.
 
   
 0.897
AGI69949.1
Hypothetical protein.
 
   
 0.842
cfa
Cyclopropane-fatty-acyl-phospholipid synthase Cfa.
 
   
 0.768
AGI67110.1
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.611
AGI68877.1
Putative RNA polymerase sigma factor 7; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.597
AGI69743.1
Hypothetical protein.
 
   
 0.588
Your Current Organism:
Octadecabacter antarcticus
NCBI taxonomy Id: 391626
Other names: O. antarcticus 307, Octadecabacter antarcticus 307, Octadecabacter antarcticus CIP 106731, Octadecabacter antarcticus str. 307, Octadecabacter antarcticus strain 307, unidentified alpha proteobacterium (clone 307), unidentified alpha proteobacterium clone 307
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.