STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
addADouble-strand break repair helicase AddA; Belongs to the helicase family. UvrD subfamily. (1128 aa)    
Predicted Functional Partners:
addB
Double-strand break repair protein AddB.
 
   
 0.956
AGI70162.1
Hypothetical protein; Related to nucleotidyl transferase.
       0.853
AGI70163.1
Hypothetical protein; Related to aminoglycoside phosphotransferase.
       0.853
AGI70164.1
Hypothetical protein UPF79.
     
 0.829
recD2
RecD/TraA-family helicase; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
 
 0.812
AGI69529.1
Putative ATPase.
  
 
 0.812
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.798
AGI70165.1
PAS domain-containing protein.
 
     0.782
trxA
Thioredoxin TrxA; Belongs to the thioredoxin family.
  
    0.743
AGI68846.1
Hypothetical protein.
  
     0.683
Your Current Organism:
Octadecabacter antarcticus
NCBI taxonomy Id: 391626
Other names: O. antarcticus 307, Octadecabacter antarcticus 307, Octadecabacter antarcticus CIP 106731, Octadecabacter antarcticus str. 307, Octadecabacter antarcticus strain 307, unidentified alpha proteobacterium (clone 307), unidentified alpha proteobacterium clone 307
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