Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Veis_0100KEGG: mca:MCA2683 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Veis_0099
KEGG: mca:MCA2684 hypothetical protein.
       0.782
Veis_0097
PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: she:Shewmr4_2522 AAA ATPase, central domain protein; Belongs to the AAA ATPase family.
       0.773
Veis_0098
KEGG: she:Shewmr4_2521 hypothetical protein.
       0.773
Veis_0102
PFAM: SNF2-related protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: mca:MCA2682 prophage LambdaMc01, helicase, SNF2 family.
       0.761
Veis_0101
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: fnu:FN0830 hypothetical protein.
       0.752
Veis_0095
KEGG: mca:MCA2686 hypothetical protein.
       0.708
Veis_0096
KEGG: mca:MCA2685 hypothetical protein.
       0.708
Veis_0094
TIGRFAM: DNA binding domain, excisionase family; KEGG: noc:Noc_0665 excisionase/Xis, DNA-binding.
       0.681
Veis_0103
KEGG: bam:Bamb_3644 hypothetical protein.
       0.570
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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