STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_1087PFAM: inner-membrane translocator; KEGG: bur:Bcep18194_B0625 ABC sugar transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family. (339 aa)    
Predicted Functional Partners:
Veis_1086
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bur:Bcep18194_B0626 ABC sugar transporter, periplasmic ligand binding protein.
 
 0.943
rbsA-2
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.925
Veis_3419
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ecp:ECP_3346 putative sugar uptake ABC transporter periplasmic solute-binding protein.
 
 0.809
Veis_3598
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb21377 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor.
 
 
 0.804
Veis_2682
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bcz:BCZK0579 ribose ABC transporter, ribose-binding protein.
 
 0.803
Veis_2079
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20856 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor.
 
 
 0.759
Veis_1675
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_02467 ABC-type sugar transport system, periplasmic component.
 
 0.739
Veis_1089
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_3128 short-chain dehydrogenase/reductase SDR.
       0.707
Veis_2044
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bms:BR1630 sugar-binding transcriptional regulator, LacI family.
 
 
 0.702
Veis_2026
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_A4340 ABC sugar transporter, periplasmic ligand binding protein.
 
 0.681
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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