STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_1109PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bbr:BB0089 periplasmic solute-binding protein. (338 aa)    
Predicted Functional Partners:
Veis_1108
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0090 ABC transport system permease protein.
 
 
 0.995
Veis_4284
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_A1470 binding-protein-dependent transport systems inner membrane component.
 
 
 0.980
Veis_0765
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mka:MK0602 homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease component.
 
 
 0.975
Veis_4285
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A1471 ABC transporter related.
 
 
 0.962
Veis_4286
KEGG: reh:H16_B0888 ABC-type transporter, periplasmic component: TauT family; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3.
  
 
0.936
Veis_1107
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB0091 ABC transporter ATP-binding protein.
 
  
 0.935
Veis_3809
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reu:Reut_C6361 taurine dioxygenase.
  
 
 0.927
Veis_3788
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_B4887 binding-protein-dependent transport systems inner membrane component.
 
  
 0.822
Veis_0834
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3955 ABC transporter protein, membrane protein.
 
  
 0.819
Veis_1106
PFAM: FAD dependent oxidoreductase; KEGG: bpe:BP3677 hypothetical protein.
 
    0.817
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.