STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_2000Hypothetical protein; KEGG: bxe:Bxe_C0664 putative pyruvate decarboxylase. (167 aa)    
Predicted Functional Partners:
Veis_2001
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: reh:H16_A0770 D-amino-acid dehydrogenase.
    
 0.794
Veis_1998
Hypothetical protein.
       0.773
Veis_1999
PFAM: regulatory protein, TetR; KEGG: ccr:CC2662 transcriptional regulator, TetR family.
     
 0.773
Veis_1746
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: pol:Bpro_2318 acetolactate synthase, small subunit.
  
 
 0.697
Veis_2002
PFAM: extracellular solute-binding protein, family 5; KEGG: bja:bll5596 ABC transporter substrate-binding protein.
 
     0.609
Veis_2003
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0866 putative ABC transporter permease protein.
       0.553
Veis_2004
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpa:BPP0780 putative peptide ABC transporter permease protein.
       0.553
Veis_2005
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: bbr:BB0864 putative ABC transpoter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.553
Veis_2435
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; Non-ribosomal peptide synthetase; KR; KEGG: psp:PSPPH_2899 yersiniabactin polyketide/non-ribosomal peptide synthetase.
  
 0.551
ilvC
Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.
  
  
 0.537
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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