STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_2002PFAM: extracellular solute-binding protein, family 5; KEGG: bja:bll5596 ABC transporter substrate-binding protein. (527 aa)    
Predicted Functional Partners:
Veis_2004
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpa:BPP0780 putative peptide ABC transporter permease protein.
 
 
 0.933
Veis_2003
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0866 putative ABC transporter permease protein.
 
 
 0.901
Veis_2005
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: bbr:BB0864 putative ABC transpoter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.845
Veis_2237
PFAM: extracellular solute-binding protein, family 5; KEGG: bja:bll4544 ABC transporter substrate-binding protein.
  
  
  0.822
Veis_1999
PFAM: regulatory protein, TetR; KEGG: ccr:CC2662 transcriptional regulator, TetR family.
 
     0.723
Veis_0422
PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_2113 extracellular solute-binding protein, family 5.
  
  
  0.657
Veis_1865
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_5090 binding-protein-dependent transport systems inner membrane component.
 
 
 0.637
Veis_2000
Hypothetical protein; KEGG: bxe:Bxe_C0664 putative pyruvate decarboxylase.
 
     0.609
Veis_1866
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_B1127 ABC-type transporter, permease component: PepT family.
 
 
 0.601
Veis_2001
D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: reh:H16_A0770 D-amino-acid dehydrogenase.
       0.572
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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