close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_3203TIGRFAM: outer membrane protein; KEGG: pen:PSEEN0746 hypothetical protein. (954 aa)    
Predicted Functional Partners:
Veis_3204
Hypothetical protein.
       0.689
Veis_2440
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rru:Rru_A2337 TonB-dependent receptor.
   
 
 0.657
Veis_3205
KEGG: pen:PSEEN0746 hypothetical protein.
 
 
0.601
Veis_0261
KEGG: lin:lin1649 hypothetical protein.
  
     0.543
Veis_2435
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; Non-ribosomal peptide synthetase; KR; KEGG: psp:PSPPH_2899 yersiniabactin polyketide/non-ribosomal peptide synthetase.
  
  
 0.499
Veis_4383
KEGG: ana:alr2678 probable acyl-CoA synthase.
     
 0.470
Veis_1644
Type I secretion system ATPase; KEGG: pfl:PFL_5376 ABC transporter, ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.455
Veis_2576
Type I secretion system ATPase; KEGG: plu:plu0634 unnamed protein product; similar to toxin secretion ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase.
  
  
 0.444
Veis_1645
KEGG: cch:Cag_0740 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.441
Veis_3718
PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related.
 
     0.438
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.