STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Veis_3203TIGRFAM: outer membrane protein; KEGG: pen:PSEEN0746 hypothetical protein. (954 aa)    
Predicted Functional Partners:
Veis_3204
Hypothetical protein.
       0.689
Veis_3205
KEGG: pen:PSEEN0746 hypothetical protein.
 
 
0.612
Veis_0261
KEGG: lin:lin1649 hypothetical protein.
  
     0.543
Veis_2435
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; Non-ribosomal peptide synthetase; KR; KEGG: psp:PSPPH_2899 yersiniabactin polyketide/non-ribosomal peptide synthetase.
  
  
 0.517
Veis_4383
KEGG: ana:alr2678 probable acyl-CoA synthase.
  
  
 0.475
Veis_1121
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rfr:Rfer_0558 flagellar motor switch FliN.
   
 
 0.451
Veis_1644
Type I secretion system ATPase; KEGG: pfl:PFL_5376 ABC transporter, ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.445
Veis_0403
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: rfr:Rfer_2476 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.439
Veis_3718
PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related.
 
     0.439
Veis_1645
KEGG: cch:Cag_0740 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.432
Your Current Organism:
Verminephrobacter eiseniae
NCBI taxonomy Id: 391735
Other names: V. eiseniae EF01-2, Verminephrobacter eiseniae EF01-2, Verminephrobacter eiseniae str. EF01-2, Verminephrobacter eiseniae strain EF01-2
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